FastQCFastQC Report
Wed 8 May 2024
EGAF00007963296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482586
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12190.2525974644933753No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9780.20265817906031255No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8240.1707467684516335No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8070.16722408026755853No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5940.12308686949061928No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5310.11003220151434148No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5220.1081672489463018No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4980.10319404209819596No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4860.10070743867414304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)