FastQCFastQC Report
Wed 8 May 2024
EGAF00007963297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482586
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24520.5080959663148122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12640.2619222273335737No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12170.2521830305893665No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9450.19582001964416704No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9320.19312619926810973No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8920.18483752118793334No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8770.1817292669078672No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6290.13033946281077363No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6230.12909616109874716No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5930.12287965253861488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5020.1040229099062136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)