FastQCFastQC Report
Wed 8 May 2024
EGAF00007963298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502725
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12310.24486548311701228No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10060.20010940374956487No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8840.17584166293699338No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7990.15893381073151325No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5820.11576905863046397No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5590.11119399273956934No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5240.10423193594907754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5070.1008503655079815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)