FastQCFastQC Report
Wed 8 May 2024
EGAF00007963299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502725
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13070.2599830921477945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12510.2488438012830076No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9550.18996469242627678No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9240.18379829926898406No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8930.1776319061116913No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8590.17086876522949923No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.1296931722114476No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6270.12472027450395345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.12432244268735392No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6120.12173653587945696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5210.10363518822417822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)