FastQCFastQC Report
Wed 8 May 2024
EGAF00007963300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485240
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11830.24379688401615696No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9540.19660374247794907No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8060.16610337152749155No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7810.16095128183991428No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5780.11911631357678674No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5660.11664331052674964No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5120.10551479680158272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)