FastQCFastQC Report
Wed 8 May 2024
EGAF00007963301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485240
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24620.5073777924326107No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12640.26048965460390733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11980.24688813782870334No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9160.18877256615283158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9050.1865056466902976No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8680.1788805539526832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8240.1698128761025472No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6340.13065699447695986No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.1298326601269475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6200.12777182425191658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)