FastQCFastQC Report
Wed 8 May 2024
EGAF00007963303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444505
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16370.3682748225554268No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14550.327330401232832No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9720.21867020618440736No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8020.18042541703692871No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7910.1779507542097389No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7900.1777257848618126No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7740.17412627529499106No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7100.15972823702770497No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6940.15612872746088347No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6810.15320412593784097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6240.1403808731060393No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5970.134306700712028No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5850.13160706853691184No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5500.12373314135948976No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.12058357048852093No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5220.11743399961755212No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4770.10731037896086658No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4700.10573559352538217No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4670.10506068548160313No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4640.10438577743782411No Hit

[OK]Adapter Content

Adapter graph