FastQCFastQC Report
Wed 8 May 2024
EGAF00007963304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426939
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15060.3527436003738239No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT14450.3384558449801962No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9310.21806393887651399No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7190.16840813324620146No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6760.15833643682118523No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6610.15482305434734236No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6530.15294925036129284No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6530.15294925036129284No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6130.14358023043104517No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5410.1267159945565994No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5060.11851810211763274No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG4990.11687852362983939No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4940.11570739613855845No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4890.11453626864727746No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4530.1061041507100546No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4300.1007169642501622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)