FastQCFastQC Report
Wed 8 May 2024
EGAF00007963305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426939
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21160.49562115431010056No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15100.35368050236684867No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13950.32674457006738666No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9310.21806393887651399No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7960.18644349661192816No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7680.17988518266075482No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7430.17402954520435002No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7150.16747123125317667No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6910.1618498192950281No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6780.1588048878176976No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5950.13936417146243374No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5670.1328058575112604No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5630.13186895551823563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5460.12788712204788039No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.12320261208275657No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4800.11242823916297177No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4740.11102288617343462No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4650.1089148566891289No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4490.10516724871702983No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4470.10469879772051745No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4430.10376189572749268No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4330.10141964074493078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)