FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445687
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15480.34732895507385225No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15370.3448608552638959No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9850.2210071193460882No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8390.188248703686668No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8330.18690246742669184No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7590.1702988868869857No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7290.16356770558710484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7250.16267021474712073No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6840.15347093363728356No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6710.1505540884073352No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6110.13709172580757348No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5730.12856556282772438No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.12834119011772835No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5580.12519997217778397No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5320.11936628171788721No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5040.11308384583799842No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5020.11263510041800637No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4870.10926950976806592No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4640.10410893743815726No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4480.10051897407822083No Hit

[OK]Adapter Content

Adapter graph