FastQCFastQC Report
Wed 8 May 2024
EGAF00007963309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493948
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14960.30286588871703096No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12960.26237579664256155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10010.20265291083271922No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9270.18767157676516558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7280.14738393515106854No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7240.14657413330957914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6470.13098544786090843No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6380.1291633937175573No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6200.12551928543085508No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5950.1204580239215464No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5690.11519431195186537No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.10466688801250333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5160.104464437552131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)