FastQCFastQC Report
Wed 8 May 2024
EGAF00007963311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494631
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16120.3258995089268566No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12800.25877876639353375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10110.20439479126864268No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9060.18316684558792312No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7830.1582998235047945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7600.15364989254616068No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6590.1332306305104209No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6420.12979372501925676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6280.1269633322618275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6030.1219090594807038No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5720.11564176123211041No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5130.10371367746865845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4990.10088328471122919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)