FastQCFastQC Report
Wed 8 May 2024
EGAF00007963313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478693
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24670.5153616200780041No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15170.3169045714058906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12380.25862086974323834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9970.2082754500274706No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8410.17568671361394464No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7220.1508273569908062No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7160.14957394405182445No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5960.12450568527218907No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5840.12199885939422551No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5740.11990983782925592No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5730.11970093567275895No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4940.103197665309499No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4820.10069083943153546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)