FastQCFastQC Report
Wed 8 May 2024
EGAF00007963314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490766
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA16220.33050374312808956No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15840.3227607454469136No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14610.29769788453152823No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12700.2587791330287754No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10880.22169424939788004No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10840.22087919701038786No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10510.21415501481357713No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10160.20702330642302036No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9340.19031473247943012No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7650.15587876910788442No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7380.150377165492312No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7380.150377165492312No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7070.14406050948924742No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6900.14059653684240556No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6800.13855890587367503No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5130.10453046869587544No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5070.10330789011463713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)