FastQCFastQC Report
Wed 8 May 2024
EGAF00007963315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490766
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19920.4058960889711186No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16580.3378392146155194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14920.30401454053459287No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14640.29830917382214744No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11700.23840282334147028No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11300.23025229946654818No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11210.22841843159469075No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10320.21028351597298917No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9190.18725828602633435No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8790.17910776215141228No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8380.17075347517961717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.16239918820782206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7800.15893521556098017No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7750.15791640007661492No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7730.15750887388286883No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7420.15119221787980422No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7330.14935835000794676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6030.12286914741445007No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5600.11410733424890886No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.11247722947392443No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5340.10880949373020951No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5330.10860573063333645No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5310.10819820443959036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)