FastQCFastQC Report
Wed 8 May 2024
EGAF00007963316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474176
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15050.31739269806991494No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA14800.3121203941152652No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14350.30263024699689567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11840.24969631529221217No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10480.2210149817789175No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10010.21110305034417598No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9800.2066743150222702No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9580.20203468754217843No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8770.18495242272911325No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7190.1516314617357268No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7130.15036610878661089No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6810.1436175597246592No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6760.14256309893372923No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6620.1396106087191254No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6240.1315967067080578No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG4840.10207180456201917No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC4750.10017377513834526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)