FastQCFastQC Report
Wed 8 May 2024
EGAF00007963317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474176
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23200.4892698069914968No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18900.3985861789715211No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC15170.3199234039681469No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14500.3057936293696855No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13730.2895549331893643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10690.22544371710082334No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10590.2233347955189634No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10590.2233347955189634No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9820.2070960993386422No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8590.18115636388176543No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8040.16955729518153595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7720.1628087461195843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.16154339317046837No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7520.1585909029558645No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7100.1497334323120529No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7100.1497334323120529No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7060.14888986367930895No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6520.1375016871372655No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5300.1117728438385747No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5140.10839856930759888No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5100.10755500067485489No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5040.10628964772573897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)