FastQCFastQC Report
Wed 8 May 2024
EGAF00007963318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492716
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA16000.32473067649518184No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15500.3145828428547074No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14430.2928664788640921No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11760.23867704722395863No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11000.22325234009043748No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10860.22041094667110467No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10410.21127789639467767No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10360.21026311303063025No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9030.18326987554696822No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7280.1477524578053077No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7040.14288149765788No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7000.14206967096664205No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6840.13882236420169022No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6470.13131296730773914No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6380.12948635725245375No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5560.11284391008207569No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5440.11040843000836181No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5160.10472564316969613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)