FastQCFastQC Report
Wed 8 May 2024
EGAF00007963319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492716
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19680.39941873208907364No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16490.3346755534628468No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14420.2926635221912826No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13730.27865951176742787No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12070.24496870408105276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11220.22771738689224627No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11070.22467303680010392No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10440.21188676641310614No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9100.18469057225663466No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8810.1788048287451595No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7990.1621623815747814No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7740.1570884647545442No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7720.15668255140892523No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7410.15039089455183108No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7200.1461288044228318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7030.14267854098507052No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6990.14186671429383255No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5820.11812078357512237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.11751191355669392No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5660.11487347681017057No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5600.11365573677331363No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5560.11284391008207569No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5420.11000251666274284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)