FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007963320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475852
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15390.323419886855577No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA15240.3202676462429495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14280.30009330632213377No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11670.24524431966241605No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10540.22149744038062255No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10140.213091465413616No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10080.21183056916856502No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9590.201533249833982No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8600.18072846179064078No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7640.16055412186982507No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7570.15908307625059892No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7070.14857560754184074No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6990.14689441254843943No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6940.1458436656775636No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6240.13113320948530216No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5340.11221976580953741No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5090.10696603145515832No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC4890.10276304397165506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)