FastQCFastQC Report
Wed 8 May 2024
EGAF00007963321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475852
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23920.5026773030269915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19400.4076897858998176No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC15660.3290939199583064No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.30597748879903836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13200.2773971739112161No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11010.23137446096685527No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10550.2217075897547977No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10490.22044669350974674No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10320.21687415414876893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9000.18913443675764732No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8510.17883711742306432No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8190.17211233744945906No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8040.1689600968368316No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7870.16538755747585385No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.16517740810167866No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7640.16055412186982507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7380.15509023814127082No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6740.14164067819406034No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5680.119364844531493No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5310.11158931768701193No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5260.1105385708161361No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4890.10276304397165506No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG4800.10087169960407859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)