FastQCFastQC Report
Wed 8 May 2024
EGAF00007963323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508577
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17890.35176580930714524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10800.21235722417647673No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG10360.2037056335618795No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8810.17322843935136664No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7500.14747029456699773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6860.13488616276394724No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6200.12190877684205145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.1199425062478248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6000.11797623565359817No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5660.11129091563322761No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5520.10853813680131032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)