FastQCFastQC Report
Wed 8 May 2024
EGAF00007963325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513032
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19200.37424566108936674No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10660.2077843097506588No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG10500.20466559590824746No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9670.18848726785073835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7370.14365575636607464No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7000.13644373060549828No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6870.13390977560853903No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6220.12124000062374277No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6120.11929080447223565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6020.11734160832072853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5520.10759562756319295No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5460.10642610987228866No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5260.10252771756927442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)