FastQCFastQC Report
Wed 8 May 2024
EGAF00007963327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491797
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24380.49573299552457617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17530.3564478839846522No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG10250.20841932748674757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10020.2037426011138742No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8850.1799522973909967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6960.14152180676173298No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6570.13359170552077382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6070.12342490905800564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.12118821383619664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5650.11488480002928038No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5380.10939472993938557No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5350.10878472215161948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)