FastQCFastQC Report
Wed 8 May 2024
EGAF00007963329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505859
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12450.24611601256476606No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11850.2342549999110424No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9410.18602021511923283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6330.1251336834967847No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6330.1251336834967847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5960.11781939236032174No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.11584255691803448No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5400.10674911388351299No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5230.10338849363162463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)