FastQCFastQC Report
Wed 8 May 2024
EGAF00007963331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506764
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13060.25771364974623295No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12340.24350585282301032No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.17779479205310558No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6200.12234491794997278No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.11642500256529667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5700.11247839230884593No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5600.11050508718062056No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5390.10636114641134731No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5140.10142788359078388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)