FastQCFastQC Report
Wed 8 May 2024
EGAF00007963332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487459
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10290.2110946766805003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9800.20104254921952408No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7500.15385909379045212No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5570.11426602032170911No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5490.11262485665461096No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5050.1035984564855711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)