FastQCFastQC Report
Wed 8 May 2024
EGAF00007963333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487459
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23880.48988735462879957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12090.24802085919020883No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10830.22217253143341284No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8540.17519422146272814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5710.11713805673913087No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.11570203853041999No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5620.11529174761364545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5210.1068807838197674No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5190.10647049290299286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)