FastQCFastQC Report
Wed 8 May 2024
EGAF00007963335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476449
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46480.9755503737021172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34120.7161312123648071No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27310.5731988103658524No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23600.495331084754087No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21200.4449584320672307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20790.4363531038998928No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18650.39143748858744587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17110.3591150364467131No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16390.3440032406406562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15670.3288914448345993No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14640.30727318138982346No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10570.22184955787502963No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10190.2138738878662774No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10100.21198491339052028No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9530.2000214083773919No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9250.19414459889725869No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8530.1790328030912018No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG7780.16329134912655918No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7520.15783431175214976No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7510.15762442569928786No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7150.15006852779625943No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7100.1490190975319499No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6870.14419171831612618No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6590.13831490883599293No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6320.1326479854087216No Hit
GGTTCCCCGAAATACAAAACTCTGATCGAAG6080.12761072014003597No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6000.12593163171714075No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5980.12551185961141698No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5960.12509208750569317No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5660.11879550591983612No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.1171164174969409No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5120.10746165906529345No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5040.10578257064239824No Hit
GAAGATGGCAACAAACCGGGTAAGGAAGACG4920.10326393800805542No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4860.10200462169088402No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4780.10032553326798882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)