FastQCFastQC Report
Wed 8 May 2024
EGAF00007963337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459215
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43670.9509706782226189No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32760.7133913308580948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25860.5631349150180199No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23290.5071698441906297No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22030.479731716080703No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20880.45468898010735714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19710.42921071829099655No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19130.41658046884357003No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16600.3614864497022092No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15380.3349193732783119No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14370.31292531820606906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13240.28831810807573793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10160.2212471282514726No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10000.21776292150735496No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9180.19990636194375183No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9040.19685768104264886No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8600.18727611249632525No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8340.18161427653713402No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG8200.17856559563603105No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7930.17268599675533247No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7300.1589669327003691No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6870.14960312707555284No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6860.1493853641540455No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6740.14677220909595723No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6510.14176366190128808No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6160.13414195964853065No Hit
GGTTCCCCGAAATACAAAACTCTGATCGAAG6160.13414195964853065No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5970.1300044641398909No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.1252136798667291No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5550.120858421436582No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5530.12042289559356728No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5520.12020513267205993No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5080.1106235641257363No Hit
GAAGATGGCAACAAACCGGGTAAGGAAGACG4860.1058327798525745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)