FastQCFastQC Report
Wed 8 May 2024
EGAF00007963338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479115
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27260.5689656971708255No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25350.5291005291005291No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21310.4447783934963422No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20100.4195234964465734No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18890.39426859939680453No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18810.39259885413731566No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13870.28949208436387924No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13840.2888659298915709No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13690.2857351575300293No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12990.2711248865095019No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10400.2170668837335504No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10050.2097617482232867No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9840.20537866691712844No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9830.20516994875969236No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9470.19765609509199253No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9120.19035095958172882No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9110.1901422414242927No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8770.1830458240714651No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8150.1701052983104265No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7500.1565386180770796No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT7330.1529904094006658No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7330.1529904094006658No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7260.15152938229861307No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6960.14526783757552988No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6880.14359809231604104No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6760.14109347442680778No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6720.14025860179706334No Hit
GAAATCCTGCTTCAGTTCGTTCCATTCCTCGTCCGTGAAGGTGT6340.13232731181449128No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6340.13232731181449128No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5570.11625601369191112No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5270.10999446896882795No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4990.10415036056061697No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4910.10248061530112812No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4840.10101958819907539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)