FastQCFastQC Report
Wed 8 May 2024
EGAF00007963339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479115
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46050.9611471149932688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33050.6898135103263309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27860.5814887866169918No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23790.4965404965404966No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21520.44916147480250046No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20200.4216106780209344No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19370.4042870709537376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17240.359830103419847No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15970.33332289742546156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15290.3191300627198063No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14610.3049372280141511No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11120.23209459106895003No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10650.22228483766945306No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9740.2032914853427674No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9730.20308276718533128No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9730.20308276718533128No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8730.18221095144172067No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG8310.1734447888294042No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8010.16718324410632104No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7700.16071298122580174No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7640.1594606722811851No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7540.15737349070682405No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7350.15340784571553803No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7180.14985963703912422No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6970.14547655573296597No Hit
GGTTCCCCGAAATACAAAACTCTGATCGAAG6550.13671039312064953No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.13232731181449128No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6250.13044884839756635No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6050.12627448524884421No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5630.11750832263652776No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5340.11145549607088068No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5320.11103805975600847No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5060.1056113876626697No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4890.10206317898625591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)