FastQCFastQC Report
Wed 8 May 2024
EGAF00007963341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461318
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43380.9403491734551871No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34270.7428715116253864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25900.5614348453778087No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23070.5000888757863339No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22010.47711123346585216No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20940.45391682093479985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19880.4309391786143181No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17890.38780190671077214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17140.3715441409179785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15040.3260223966981562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14480.31388326490620355No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14170.3071633883785155No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10520.22804226152025286No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10160.22023853393971188No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9590.20788263193718867No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9550.20701555109490632No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9100.1972608916192301No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8770.1901074746704009No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG8090.17536710035160127No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7590.16452858982307217No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7160.1552074707685371No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6910.14978821550427254No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6620.14350187939772566No Hit
GGTTCCCCGAAATACAAAACTCTGATCGAAG6570.14241802834487274No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6510.14111740708144924No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6330.13721554329117874No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6300.13656523265946702No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6140.13309690929033768No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6020.1304956667634907No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5900.1278944242366437No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.12377579023580264No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5670.12290870939352029No Hit
GAAGATGGCAACAAACCGGGTAAGGAAGACG4800.10404970107387962No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4790.10383293086330904No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4700.1018819989681738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)