FastQCFastQC Report
Wed 8 May 2024
EGAF00007963343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455501
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23060.5062557491641072No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11300.24807848939958418No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8940.19626740665772413No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7890.17321586560732027No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.1585067870323007No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5900.12952770685465018No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5720.12557601410315236No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5110.11218416644529869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)