FastQCFastQC Report
Wed 8 May 2024
EGAF00007963345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476092
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.24154995253018327No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9630.2022718298144056No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC8490.17832687799837008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.1478705796358687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6210.13043697436629895No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.1293867571813851No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5900.12392562781983313No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5220.10964267410500492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)