FastQCFastQC Report
Wed 8 May 2024
EGAF00007963347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459340
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23420.5098619758784343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11160.24295728654155965No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9540.2076892933339139No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC8530.18570122349457918No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.16306004266991772No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5640.12278486524143337No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5390.11734227369704357No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5130.11168197849087821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)