FastQCFastQC Report
Wed 8 May 2024
EGAF00007963348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487415
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22690.46551706451381264No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14780.3032323584625012No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7390.1516161792312506No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6550.13438240513730598No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6310.12945846968189326No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5740.117764122975288No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5160.10586461229137388No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4910.10073551285865229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)