FastQCFastQC Report
Wed 8 May 2024
EGAF00007963349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487415
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22940.4706461639465343No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17740.36396089574592494No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15320.3143112132371798No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6890.14135798036580738No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5970.12248289445339189No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5900.12104674661222983No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.10935239990562456No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4950.10155616876788773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)