FastQCFastQC Report
Wed 8 May 2024
EGAF00007963350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469848
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22070.4697263795951031No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14110.3003098874529635No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8010.17048066608775606No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6770.14408915223646795No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6610.1406837956104953No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6020.12812654305222113No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5270.11216393386797434No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4770.10152219441180976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)