FastQCFastQC Report
Wed 8 May 2024
EGAF00007963351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469848
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22570.48036811905126764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22530.47951677989477454No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18070.3845924639457867No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14860.31627249663721035No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7600.16175443973370113No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6060.1289778822087143No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5380.11450511654833052No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4750.1010965248335632No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4740.10088369004443991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)