FastQCFastQC Report
Wed 8 May 2024
EGAF00007963352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490222
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23760.48467837020778337No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14820.3023120137407134No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7380.15054403923120546No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6880.14034457857868476No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6780.1383046864481806No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5920.12076161412584502No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5450.11117412111247557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)