FastQCFastQC Report
Wed 8 May 2024
EGAF00007963353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490222
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24090.4914100142384471No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17540.35779707969042596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15590.31801918314559524No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7530.15360387742696166No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5960.12157757097804667No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5810.11851773278229048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5740.11708980829093758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)