FastQCFastQC Report
Wed 8 May 2024
EGAF00007963354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472030
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22050.4671313263987458No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13920.2948965108149906No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7850.16630298921678707No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7060.14956676482426964No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6510.13791496303201067No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5410.11461135944749275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)