FastQCFastQC Report
Wed 8 May 2024
EGAF00007963355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472030
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23920.5067474524924264No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22300.4724275999406818No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18570.3934071986949982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14630.3099379276740885No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7240.1533800817744635No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5690.12054318581446095No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4770.10105289918013685No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4730.10020549541342712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)