FastQCFastQC Report
Wed 8 May 2024
EGAF00007963359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470669
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23930.5084252415179246No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20600.4376748840480253No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14240.3025480751865961No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10700.22733598346183834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8740.18569313041649227No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8310.17655719837082962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8070.1714580735081342No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7640.1623221414624715No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7490.15913518842328686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7250.1540360635605914No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.14362535029925488No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6510.1383137619006138No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.1289653663190055No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6010.12769058510333164No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5580.11855465305766898No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5150.10941872101200632No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5090.10814393979633247No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT4880.10368220554147393No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4800.1019824972539088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)