FastQCFastQC Report
Wed 8 May 2024
EGAF00007963361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491241
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21950.44682752457551383No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15200.3094204270409025No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11260.22921539529477383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9150.18626295443580645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.18402372766116834No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8660.1762882169851458No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7870.1602064974218357No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7510.15287811888665645No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7410.15084245818244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6820.13883206002756285No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6370.12967158685858876No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6310.12845019043605888No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5820.1184754529853982No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5800.1180683208445549No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5610.11420056550654363No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT5390.1097221119572674No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5300.10789001732347259No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5260.10707575304178601No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5030.10239373342208814No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4970.10117233699955826No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4930.10035807271787167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)