FastQCFastQC Report
Sun 21 May 2023
EGAF00007963363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475267
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24250.5102395074768499No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20710.43575505978744583No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14080.29625452640305344No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10480.22050763044772725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8790.18494867095758805No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.17758438940637578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8370.17611153309613334No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7700.16201419412666984No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7320.15401868844249653No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7190.151283383866332No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6630.13950053338439236No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6450.13571318858662604No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6330.13318829205478186No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5870.12350952201604572No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5590.11761809677507591No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5500.11572442437619275No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5010.10541443020449558No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4890.10288953367265138No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4870.10246871758401066No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT4870.10246871758401066No Hit

[OK]Adapter Content

Adapter graph