FastQCFastQC Report
Wed 8 May 2024
EGAF00007963364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532661
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT30230.5675279399092481No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15290.2870493616014688No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14250.267524748385934No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12330.23147930860340815No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11320.2125179053844753No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10850.20369428210437784No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACTGCT10050.1886753488616587No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10040.18848761219612475No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9860.18510835221651295No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9640.1809781455747652No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9440.17722341226408542No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8060.15131575242039497No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8040.150940279089327No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7740.14530817912330732No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7670.1439940224645694No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7260.13629681917767586No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7190.13498266251893792No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7060.1325420858669961No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6910.12972603588398626No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6860.1287873525563163No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6510.1222165692626267No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6500.1220288325970927No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6400.12015146594175283No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6220.11677220596214102No Hit
GGAATGCTGTGCGGACGGACCGGTGACAGCGCGATCGCTGCGAG6080.11414389264466518No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5990.11245426265485928No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.10456932270243176No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5480.10287969271262586No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5390.10119006272281995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)