FastQCFastQC Report
Wed 8 May 2024
EGAF00007963365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532661
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA31550.5923091797597346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24930.46802750717623404No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19600.36796386444661805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14470.2716549550276818No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12420.23316893859321408No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12310.23110383527234019No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11240.21101601206020337No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCC10730.20144144211796997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10420.19562160548641633No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10380.19487065882428037No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10280.19299329216894048No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9490.17816209559175536No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8610.16164126902476433No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8600.16145353235923035No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8530.16013937570049241No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8480.1592006923728225No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8090.15187896241699692No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7910.14849970243738514No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7670.1439940224645694No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7550.14174118247816153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7340.13779871250194775No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7200.13517039918447193No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7120.13366850586020002No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7030.1319788758703941No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6520.12240430592816069No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6340.11902504594854889No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6330.1188373092830149No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC6330.1188373092830149No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6090.11433162931019918No Hit
GCACAGACCCCGGATCAGGCCTCTCTGCACG6060.1137684193135972No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5790.10869952934417951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)