FastQCFastQC Report
Wed 8 May 2024
EGAF00007963366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514463
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28500.5539756989326735No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14670.28515170187166033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14670.28515170187166033No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12020.2336416807428328No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11640.22625533809039716No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10390.20195815831264832No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10370.20156940343620433No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9760.18971237970466293No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACTGCT9550.1856304535020011No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9470.1840754339962252No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9160.17804973341134347No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7610.1479212304869349No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7510.14597745610471502No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7170.13936862320516732No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7110.1382023585758354No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7110.1382023585758354No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6950.13509231956428355No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6850.13314854518206362No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6720.13062163848517774No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6680.1298441287322898No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6650.1292609964176238No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6480.12595657996784998No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6410.12459593790029604No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT6170.11993087938296826No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6140.11934774706830228No Hit
GGAATGCTGTGCGGACGGACCGGTGACAGCGCGATCGCTGCGAG5880.11429393367453054No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5390.10476943920165298No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5330.10360317457232104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)